IL_6GSN_043

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

ACGUUU*AUCGU

Length

11 nucleotides

Bulged bases

6GSN|1|2|U|819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_043 not in the Motif Atlas

Homologous match to IL_8P9A_416

Geometric discrepancy: 0.5256

The information below is about IL_8P9A_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSN|1|2|A|816
6GSN|1|2|C|817
6GSN|1|2|G|818
6GSN|1|2|U|819
6GSN|1|2|U|820
6GSN|1|2|U|821
*
6GSN|1|2|A|849
6GSN|1|2|U|850
6GSN|1|2|C|851
6GSN|1|2|G|852
6GSN|1|2|U|853

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain H

40S ribosomal protein S7

Chain L

KLLA0A10483p