IL_6GSN_050

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

GGAUC*GGCAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSN|1|2|G|1040
6GSN|1|2|G|1041
6GSN|1|2|A|1042
6GSN|1|2|U|1043
6GSN|1|2|C|1044
*
6GSN|1|2|G|1072
6GSN|1|2|G|1073
6GSN|1|2|C|1074
6GSN|1|2|A|1075
6GSN|1|2|C|1076

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain A

40S ribosomal protein S0

Chain B

40S ribosomal protein S1

Chain N

KLLA0F18040p

Chain a

40S ribosomal protein S26

Chain b

40S ribosomal protein S27