IL_6GSN_051
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- GUG*CC
- Length
- 5 nucleotides
- Bulged bases
- 6GSN|1|2|U|1051
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSN_051 not in the Motif Atlas
- Homologous match to IL_4V88_439
- Geometric discrepancy: 0.3815
- The information below is about IL_4V88_439
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
6GSN|1|2|G|1050
6GSN|1|2|U|1051
6GSN|1|2|G|1052
*
6GSN|1|2|C|1065
6GSN|1|2|C|1066
Current chains
- Chain 2
- 18S rRNA (1798-MER)
Nearby chains
- Chain A
- 40S ribosomal protein S0
- Chain B
- 40S ribosomal protein S1
- Chain R
- KLLA0B01474p
- Chain b
- 40S ribosomal protein S27
- Chain q
- Eukaryotic translation initiation factor 3 subunit C
Coloring options: