IL_6GSN_052

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

UUU*GA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_052 not in the Motif Atlas

Geometric match to IL_4LFB_041

Geometric discrepancy: 0.286

The information below is about IL_4LFB_041

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6GSN|1|2|U|1053
6GSN|1|2|U|1054
6GSN|1|2|U|1055
*
6GSN|1|2|G|1063
6GSN|1|2|A|1064

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain B

40S ribosomal protein S1

Chain R

KLLA0B01474p

Chain b

40S ribosomal protein S27

Chain o

Eukaryotic translation initiation factor 3 subunit A,eIF3a

Chain q

Eukaryotic translation initiation factor 3 subunit C