IL_6GSN_054

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

GUC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_054 not in the Motif Atlas

Geometric match to IL_6OL3_002

Geometric discrepancy: 0.1857

The information below is about IL_6OL3_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6GSN|1|2|G|1118
6GSN|1|2|U|1119
6GSN|1|2|C|1120
*
6GSN|1|2|G|1125
6GSN|1|2|G|1126
6GSN|1|2|C|1127

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain h

60S ribosomal protein L41-A

Chain q

Eukaryotic translation initiation factor 3 subunit C