IL_6GSN_055

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

UUG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_055 not in the Motif Atlas

Geometric match to IL_4V84_420

Geometric discrepancy: 0.3772

The information below is about IL_4V84_420

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_10569.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6GSN|1|2|U|1143
6GSN|1|2|U|1144
6GSN|1|2|G|1145
*
6GSN|1|2|C|1630
6GSN|1|2|A|1631

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain C

KLLA0F09812p

Chain a

40S ribosomal protein S26