IL_6GSN_057
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- GGA*UU
- Length
- 5 nucleotides
- Bulged bases
- 6GSN|1|2|G|1149
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSN_057 not in the Motif Atlas
- Homologous match to IL_4V88_442
- Geometric discrepancy: 0.4065
- The information below is about IL_4V88_442
- Detailed Annotation
- Single bulged G
- Broad Annotation
- No text annotation
- Motif group
- IL_00225.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 49
Unit IDs
6GSN|1|2|G|1148
6GSN|1|2|G|1149
6GSN|1|2|A|1150
*
6GSN|1|2|U|1625
6GSN|1|2|U|1626
Current chains
- Chain 2
- 18S rRNA (1798-MER)
Nearby chains
- Chain 3
- mRNA
- Chain O
- 40S ribosomal protein S14
- Chain a
- 40S ribosomal protein S26
Coloring options: