IL_6GSN_065

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6GSN|1|2|U|1268

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_065 not in the Motif Atlas

Homologous match to IL_4V88_449

Geometric discrepancy: 0.1925

The information below is about IL_4V88_449

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6GSN|1|2|G|1267
6GSN|1|2|U|1268
6GSN|1|2|G|1269
*
6GSN|1|2|C|1438
6GSN|1|2|C|1439

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a

Chain i

Eukaryotic translation initiation factor 1A