IL_6GSN_071

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

CUAC*GAG

Length

7 nucleotides

Bulged bases

6GSN|1|2|U|1339

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_071 not in the Motif Atlas

Homologous match to IL_4V88_455

Geometric discrepancy: 0.1829

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6GSN|1|2|C|1338
6GSN|1|2|U|1339
6GSN|1|2|A|1340
6GSN|1|2|C|1341
*
6GSN|1|2|G|1381
6GSN|1|2|A|1382
6GSN|1|2|G|1383

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain Q

40S ribosomal protein S16

Chain R

KLLA0B01474p

Chain U

KLLA0F25542p

Chain g

KLLA0E12277p