IL_6GSN_078

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_078 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.1533

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6GSN|1|2|G|1538
6GSN|1|2|G|1539
6GSN|1|2|G|1540
6GSN|1|2|A|1541
6GSN|1|2|U|1542
6GSN|1|2|A|1543
*
6GSN|1|2|U|1564
6GSN|1|2|U|1565
6GSN|1|2|C|1566
6GSN|1|2|A|1567
6GSN|1|2|A|1568
6GSN|1|2|C|1569

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain S

KLLA0B01562p

Chain T

KLLA0A07194p