IL_6GSN_084

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_084 not in the Motif Atlas

Geometric match to IL_5J7L_333

Geometric discrepancy: 0.2258

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6GSN|1|2|C|1651
6GSN|1|2|G|1652
6GSN|1|2|A|1653
6GSN|1|2|U|1654
*
6GSN|1|2|A|1742
6GSN|1|2|G|1743
6GSN|1|2|A|1744
6GSN|1|2|G|1745

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain X

RPS23

Chain h

60S ribosomal protein L41-A

Chain p

Eukaryotic translation initiation factor 3 subunit B