IL_6GSN_086
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- UUA*UUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSN_086 not in the Motif Atlas
- Homologous match to IL_4V88_470
- Geometric discrepancy: 0.1481
- The information below is about IL_4V88_470
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6GSN|1|2|U|1663
6GSN|1|2|U|1664
6GSN|1|2|A|1665
*
6GSN|1|2|U|1732
6GSN|1|2|U|1733
6GSN|1|2|G|1734
Current chains
- Chain 2
- 18S rRNA (1798-MER)
Nearby chains
- Chain I
- 40S ribosomal protein S8
- Chain o
- Eukaryotic translation initiation factor 3 subunit A,eIF3a
- Chain p
- Eukaryotic translation initiation factor 3 subunit B
- Chain q
- Eukaryotic translation initiation factor 3 subunit C
Coloring options: