IL_6GSN_095
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- UAUAAG*UGAA
- Length
- 10 nucleotides
- Bulged bases
- 6GSN|1|2|U|66, 6GSN|1|2|A|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSN_095 not in the Motif Atlas
- Geometric match to IL_5J7L_256
- Geometric discrepancy: 0.3521
- The information below is about IL_5J7L_256
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
6GSN|1|2|U|64
6GSN|1|2|A|65
6GSN|1|2|U|66
6GSN|1|2|A|67
6GSN|1|2|A|68
6GSN|1|2|G|69
*
6GSN|1|2|U|82
6GSN|1|2|G|83
6GSN|1|2|A|84
6GSN|1|2|A|85
Current chains
- Chain 2
- 18S rRNA (1798-MER)
Nearby chains
- Chain G
- 40S ribosomal protein S6
- Chain Y
- 40S ribosomal protein S24
Coloring options: