3D structure

PDB id
6GSN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a partial yeast 48S preinitiation complex in closed conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
5.75 Å

Loop

Sequence
UGGU*ACCA
Length
8 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GSN_099 not in the Motif Atlas
Geometric match to IL_4WF9_110
Geometric discrepancy: 0.284
The information below is about IL_4WF9_110
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_51479.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
10

Unit IDs

6GSN|1|2|U|821
6GSN|1|2|G|822
6GSN|1|2|G|823
6GSN|1|2|U|824
*
6GSN|1|2|A|846
6GSN|1|2|C|847
6GSN|1|2|C|848
6GSN|1|2|A|849

Current chains

Chain 2
18S rRNA (1798-MER)

Nearby chains

Chain L
KLLA0A10483p

Coloring options:


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