IL_6GSN_099
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- UGGU*ACCA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSN_099 not in the Motif Atlas
- Geometric match to IL_4WF9_110
- Geometric discrepancy: 0.284
- The information below is about IL_4WF9_110
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_51479.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
6GSN|1|2|U|821
6GSN|1|2|G|822
6GSN|1|2|G|823
6GSN|1|2|U|824
*
6GSN|1|2|A|846
6GSN|1|2|C|847
6GSN|1|2|C|848
6GSN|1|2|A|849
Current chains
- Chain 2
- 18S rRNA (1798-MER)
Nearby chains
- Chain L
- KLLA0A10483p
Coloring options: