IL_6GSN_101
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- AGGGGAUCGAAGAUG*CGUCGUAGUCUU
- Length
- 27 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GSN|1|2|A|982
6GSN|1|2|G|983
6GSN|1|2|G|984
6GSN|1|2|G|985
6GSN|1|2|G|986
6GSN|1|2|A|987
6GSN|1|2|U|988
6GSN|1|2|C|989
6GSN|1|2|G|990
6GSN|1|2|A|991
6GSN|1|2|A|992
6GSN|1|2|G|993
6GSN|1|2|A|994
6GSN|1|2|U|995
6GSN|1|2|G|996
*
6GSN|1|2|C|1006
6GSN|1|2|G|1007
6GSN|1|2|U|1008
6GSN|1|2|C|1009
6GSN|1|2|G|1010
6GSN|1|2|U|1011
6GSN|1|2|A|1012
6GSN|1|2|G|1013
6GSN|1|2|U|1014
6GSN|1|2|C|1015
6GSN|1|2|U|1016
6GSN|1|2|U|1017
Current chains
- Chain 2
- 18S rRNA (1798-MER)
Nearby chains
- Chain 3
- mRNA
- Chain N
- KLLA0F18040p
- Chain O
- 40S ribosomal protein S14
- Chain a
- 40S ribosomal protein S26
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
- Chain m
- Eukaryotic translation initiation factor eIF-1
- Chain p
- Eukaryotic translation initiation factor 3 subunit B
- Chain q
- Eukaryotic translation initiation factor 3 subunit C
Coloring options: