IL_6GSN_106

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

UCGUUUAUU*AUUCAAA

Length

16 nucleotides

Bulged bases

6GSN|1|2|C|114, 6GSN|1|2|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSN|1|2|U|113
6GSN|1|2|C|114
6GSN|1|2|G|115
6GSN|1|2|U|116
6GSN|1|2|U|117
6GSN|1|2|U|118
6GSN|1|2|A|119
6GSN|1|2|U|120
6GSN|1|2|U|121
*
6GSN|1|2|A|294
6GSN|1|2|U|295
6GSN|1|2|U|296
6GSN|1|2|C|297
6GSN|1|2|A|298
6GSN|1|2|A|299
6GSN|1|2|A|300

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain E

40S ribosomal protein S4

Chain I

40S ribosomal protein S8

Chain L

KLLA0A10483p