IL_6GSN_109
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- UUUGAAAAAAUUAGAGUGUUCAAAGCAGG*CUCGAAUAUAUUAGCAUG
- Length
- 47 nucleotides
- Bulged bases
- 6GSN|1|2|G|765, 6GSN|1|2|U|793, 6GSN|1|2|U|794
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GSN|1|2|U|748
6GSN|1|2|U|749
6GSN|1|2|U|750
6GSN|1|2|G|751
6GSN|1|2|A|752
6GSN|1|2|A|753
6GSN|1|2|A|754
6GSN|1|2|A|755
6GSN|1|2|A|756
6GSN|1|2|A|757
6GSN|1|2|U|758
6GSN|1|2|U|759
6GSN|1|2|A|760
6GSN|1|2|G|761
6GSN|1|2|A|762
6GSN|1|2|G|763
6GSN|1|2|U|764
6GSN|1|2|G|765
6GSN|1|2|U|766
6GSN|1|2|U|767
6GSN|1|2|C|768
6GSN|1|2|A|769
6GSN|1|2|A|770
6GSN|1|2|A|771
6GSN|1|2|G|772
6GSN|1|2|C|773
6GSN|1|2|A|774
6GSN|1|2|G|775
6GSN|1|2|G|776
*
6GSN|1|2|C|783
6GSN|1|2|U|784
6GSN|1|2|C|785
6GSN|1|2|G|786
6GSN|1|2|A|787
6GSN|1|2|A|788
6GSN|1|2|U|789
6GSN|1|2|A|790
6GSN|1|2|U|791
6GSN|1|2|A|792
6GSN|1|2|U|793
6GSN|1|2|U|794
6GSN|1|2|A|795
6GSN|1|2|G|796
6GSN|1|2|C|797
6GSN|1|2|A|798
6GSN|1|2|U|799
6GSN|1|2|G|800
Current chains
- Chain 2
- 18S rRNA (1798-MER)
Nearby chains
- Chain E
- 40S ribosomal protein S4
- Chain H
- 40S ribosomal protein S7
- Chain J
- KLLA0E23673p
- Chain L
- KLLA0A10483p
- Chain W
- 40S ribosomal protein S22
- Chain Y
- 40S ribosomal protein S24
Coloring options: