IL_6GWT_181

3D structure

PDB id

6GWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

6GWT|1|A|U|846, 6GWT|1|A|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GWT_181 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.3423

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6GWT|1|A|A|844
6GWT|1|A|A|845
6GWT|1|A|U|846
6GWT|1|A|U|847
6GWT|1|A|C|848
*
6GWT|1|A|G|930
6GWT|1|A|U|931
6GWT|1|A|U|932
6GWT|1|A|A|933
6GWT|1|A|U|934

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L30