IL_6GXO_148
3D structure
- PDB id
- 6GXO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGUAG*CGUAGAGAU
- Length
- 15 nucleotides
- Bulged bases
- 6GXO|1|a|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GXO_148 not in the Motif Atlas
- Homologous match to IL_6CZR_143
- Geometric discrepancy: 0.2146
- The information below is about IL_6CZR_143
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37722.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6GXO|1|a|G|683
6GXO|1|a|U|684
6GXO|1|a|G|685
6GXO|1|a|U|686
6GXO|1|a|A|687
6GXO|1|a|G|688
*
6GXO|1|a|C|699
6GXO|1|a|G|700
6GXO|1|a|U|701
6GXO|1|a|A|702
6GXO|1|a|G|703
6GXO|1|a|A|704
6GXO|1|a|G|705
6GXO|1|a|A|706
6GXO|1|a|U|707
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain C
- 50S ribosomal protein L2
- Chain k
- 30S ribosomal protein S11
Coloring options: