IL_6GXO_173
3D structure
- PDB id
- 6GXO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- 6GXO|1|a|A|1492, 6GXO|1|a|A|1493
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GXO_173 not in the Motif Atlas
- Geometric match to IL_5VCI_005
- Geometric discrepancy: 0.2961
- The information below is about IL_5VCI_005
- Detailed Annotation
- Not an internal loop
- Broad Annotation
- Not an internal loop
- Motif group
- IL_64417.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 18
Unit IDs
6GXO|1|a|C|1407
6GXO|1|a|A|1408
6GXO|1|a|C|1409
*
6GXO|1|a|G|1491
6GXO|1|a|A|1492
6GXO|1|a|A|1493
6GXO|1|a|G|1494
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain 7
- mRNA
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 30S ribosomal protein S12
- Chain v
- Peptide chain release factor RF1
Coloring options: