IL_6GXP_013

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXP_013 not in the Motif Atlas

Geometric match to IL_4ZC7_004

Geometric discrepancy: 0.1517

The information below is about IL_4ZC7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6GXP|1|A|C|564
6GXP|1|A|C|565
6GXP|1|A|U|566
*
6GXP|1|A|A|575
6GXP|1|A|U|576
6GXP|1|A|G|577

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15

Chain Q

50S ribosomal protein L20

Chain R

50S ribosomal protein L21