3D structure

PDB id
6GXP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
GGG*CAAUC
Length
8 nucleotides
Bulged bases
6GXP|1|A|A|788, 6GXP|1|A|A|789
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GXP_021 not in the Motif Atlas
Homologous match to IL_7RQB_023
Geometric discrepancy: 0.1578
The information below is about IL_7RQB_023
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_90991.6
Basepair signature
cWW-cWW
Number of instances in this motif group
7

Unit IDs

6GXP|1|A|G|775
6GXP|1|A|G|776
6GXP|1|A|G|777
*
6GXP|1|A|C|787
6GXP|1|A|A|788
6GXP|1|A|A|789
6GXP|1|A|U|790
6GXP|1|A|C|791

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain C
50S ribosomal protein L2
Chain E
50S ribosomal protein L4
Chain S
50S ribosomal protein L22
Chain z
Apidaecin

Coloring options:


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