IL_6GXP_021

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

6GXP|1|A|A|788, 6GXP|1|A|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXP_021 not in the Motif Atlas

Homologous match to IL_7RQB_023

Geometric discrepancy: 0.1578

The information below is about IL_7RQB_023

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.6

Basepair signature

cWW-cWW

Number of instances in this motif group

7

Unit IDs

6GXP|1|A|G|775
6GXP|1|A|G|776
6GXP|1|A|G|777
*
6GXP|1|A|C|787
6GXP|1|A|A|788
6GXP|1|A|A|789
6GXP|1|A|U|790
6GXP|1|A|C|791

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain E

50S ribosomal protein L4

Chain S

50S ribosomal protein L22

Chain z

Apidaecin