IL_6GXP_030

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GGGG*UUACC

Length

9 nucleotides

Bulged bases

6GXP|1|A|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXP_030 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3374

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6GXP|1|A|G|879
6GXP|1|A|G|880
6GXP|1|A|G|881
6GXP|1|A|G|882
*
6GXP|1|A|U|894
6GXP|1|A|U|895
6GXP|1|A|A|896
6GXP|1|A|C|897
6GXP|1|A|C|898

Current chains

Chain A

23S ribosomal RNA

Nearby chains