3D structure

PDB id
6GXP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
GUC*GC
Length
5 nucleotides
Bulged bases
6GXP|1|A|U|1012
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GXP_034 not in the Motif Atlas
Homologous match to IL_4WF9_038
Geometric discrepancy: 0.1347
The information below is about IL_4WF9_038
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

6GXP|1|A|G|1011
6GXP|1|A|U|1012
6GXP|1|A|C|1013
*
6GXP|1|A|G|1149
6GXP|1|A|C|1150

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain J
50S ribosomal protein L13
Chain Q
50S ribosomal protein L20

Coloring options:


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