IL_6GXP_067

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6GXP|1|A|A|1801, 6GXP|1|A|C|1816, 6GXP|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXP_067 not in the Motif Atlas

Homologous match to IL_4WF9_069

Geometric discrepancy: 0.144

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6GXP|1|A|U|1798
6GXP|1|A|G|1799
6GXP|1|A|C|1800
6GXP|1|A|A|1801
6GXP|1|A|A|1802
6GXP|1|A|A|1803
6GXP|1|A|C|1804
*
6GXP|1|A|G|1813
6GXP|1|A|G|1814
6GXP|1|A|A|1815
6GXP|1|A|C|1816
6GXP|1|A|G|1817
6GXP|1|A|U|1818
6GXP|1|A|A|1819
6GXP|1|A|U|1820
6GXP|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA