IL_6GXP_071

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXP_071 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.1364

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

6GXP|1|A|U|1864
6GXP|1|A|U|1865
6GXP|1|A|A|1866
6GXP|1|A|G|1867
*
6GXP|1|A|C|1874
6GXP|1|A|G|1875
6GXP|1|A|A|1876
6GXP|1|A|A|1877
6GXP|1|A|G|1878

Current chains

Chain A

23S ribosomal RNA

Nearby chains