IL_6GXP_132

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXP_132 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1575

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6GXP|1|a|U|409
6GXP|1|a|G|410
6GXP|1|a|A|411
6GXP|1|a|A|412
6GXP|1|a|G|413
6GXP|1|a|A|414
6GXP|1|a|A|415
6GXP|1|a|G|416
*
6GXP|1|a|U|427
6GXP|1|a|G|428
6GXP|1|a|U|429
6GXP|1|a|A|430
6GXP|1|a|A|431
6GXP|1|a|A|432
6GXP|1|a|G|433

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4