IL_6GXP_179

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

6GXP|1|A|U|276, 6GXP|1|A|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXP_179 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2948

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6GXP|1|A|C|274
6GXP|1|A|C|275
6GXP|1|A|U|276
6GXP|1|A|G|277
6GXP|1|A|A|278
6GXP|1|A|A|279
6GXP|1|A|U|280
6GXP|1|A|C|281
*
6GXP|1|A|G|359
6GXP|1|A|U|360
6GXP|1|A|G|361
6GXP|1|A|A|362
6GXP|1|A|G|363

Current chains

Chain A

23S ribosomal RNA

Nearby chains