IL_6GXP_182

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

6GXP|1|A|U|846, 6GXP|1|A|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXP_182 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.3351

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6GXP|1|A|A|844
6GXP|1|A|A|845
6GXP|1|A|U|846
6GXP|1|A|U|847
6GXP|1|A|C|848
*
6GXP|1|A|G|930
6GXP|1|A|U|931
6GXP|1|A|U|932
6GXP|1|A|A|933
6GXP|1|A|U|934

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L30