3D structure

PDB id
6GXP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
GGAACUAGG*CUGUC
Length
14 nucleotides
Bulged bases
6GXP|1|A|G|1992
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GXP_187 not in the Motif Atlas
Homologous match to IL_4WF9_117
Geometric discrepancy: 0.174
The information below is about IL_4WF9_117
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

6GXP|1|A|G|1666
6GXP|1|A|G|1667
6GXP|1|A|A|1668
6GXP|1|A|A|1669
6GXP|1|A|C|1670
6GXP|1|A|U|1671
6GXP|1|A|A|1672
6GXP|1|A|G|1673
6GXP|1|A|G|1674
*
6GXP|1|A|C|1990
6GXP|1|A|U|1991
6GXP|1|A|G|1992
6GXP|1|A|U|1993
6GXP|1|A|C|1994

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain K
50S ribosomal protein L14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.9315 s