IL_6GXP_197

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

6GXP|1|a|U|1025, 6GXP|1|a|U|1029, 6GXP|1|a|U|1030, 6GXP|1|a|C|1031, 6GXP|1|a|G|1032

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GXP|1|a|G|1003
6GXP|1|a|A|1004
6GXP|1|a|A|1005
6GXP|1|a|G|1006
*
6GXP|1|a|U|1023
6GXP|1|a|G|1024
6GXP|1|a|U|1025
6GXP|1|a|G|1026
6GXP|1|a|C|1027
6GXP|1|a|C|1028
6GXP|1|a|U|1029
6GXP|1|a|U|1030
6GXP|1|a|C|1031
6GXP|1|a|G|1032
6GXP|1|a|G|1033
6GXP|1|a|G|1034
6GXP|1|a|A|1035
6GXP|1|a|A|1036
6GXP|1|a|C|1037

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14