IL_6GYV_003

3D structure

PDB id

6GYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lariat-capping ribozyme (circular permutation form)

Experimental method

X-RAY DIFFRACTION, SOLUTION SCATTERING

Resolution

2.5 Å

Loop

Sequence

GUGG*CGUAACAUC

Length

13 nucleotides

Bulged bases

6GYV|1|A|C|117, 6GYV|1|A|U|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33367.1

Basepair signature

cWW-L-R-L-tWW-L-cWW-tSS

Number of instances in this motif group

1

Unit IDs

6GYV|1|A|G|98
6GYV|1|A|U|99
6GYV|1|A|G|100
6GYV|1|A|G|101
*
6GYV|1|A|C|112
6GYV|1|A|G|113
6GYV|1|A|U|114
6GYV|1|A|A|115
6GYV|1|A|A|116
6GYV|1|A|C|117
6GYV|1|A|A|118
6GYV|1|A|U|119
6GYV|1|A|C|120

Current chains

Chain A

Lariat-capping ribozyme

Nearby chains