IL_6GYV_004

3D structure

PDB id

6GYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lariat-capping ribozyme (circular permutation form)

Experimental method

X-RAY DIFFRACTION, SOLUTION SCATTERING

Resolution

2.5 Å

Loop

Sequence

GCACGGCCCUG*UGUGUCCAAUGAAC

Length

25 nucleotides

Bulged bases

6GYV|1|A|A|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32202.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cSH-L-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6GYV|1|A|G|141
6GYV|1|A|C|142
6GYV|1|A|A|143
6GYV|1|A|C|144
6GYV|1|A|G|145
6GYV|1|A|G|146
6GYV|1|A|C|147
6GYV|1|A|C|148
6GYV|1|A|C|149
6GYV|1|A|U|150
6GYV|1|A|G|151
*
6GYV|1|A|U|159
6GYV|1|A|G|160
6GYV|1|A|U|161
6GYV|1|A|G|162
6GYV|1|A|U|163
6GYV|1|A|C|164
6GYV|1|A|C|165
6GYV|1|A|A|166
6GYV|1|A|A|167
6GYV|1|A|U|168
6GYV|1|A|G|169
6GYV|1|A|A|170
6GYV|1|A|A|171||A
6GYV|1|A|C|172||A

Current chains

Chain A

Lariat-capping ribozyme

Nearby chains