IL_6GZ3_022
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 6GZ3|1|A2|G|403, 6GZ3|1|A2|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ3_022 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.154
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
6GZ3|1|A2|G|381
6GZ3|1|A2|A|382
6GZ3|1|A2|A|383
6GZ3|1|A2|C|384
*
6GZ3|1|A2|G|395
6GZ3|1|A2|A|396
6GZ3|1|A2|G|397
6GZ3|1|A2|U|398
6GZ3|1|A2|U|399
6GZ3|1|A2|C|400
6GZ3|1|A2|A|401
6GZ3|1|A2|A|402
6GZ3|1|A2|G|403
6GZ3|1|A2|A|404
6GZ3|1|A2|G|405
6GZ3|1|A2|G|406
6GZ3|1|A2|G|407
6GZ3|1|A2|C|408
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AP
- ribosomal protein uL22
- Chain AY
- Ribosomal protein L26
- Chain Al
- ribosomal protein eL39
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