IL_6GZ3_059

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGAG*CCGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ3_059 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.2888

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6GZ3|1|A2|C|1413
6GZ3|1|A2|C|1414
6GZ3|1|A2|G|1415
6GZ3|1|A2|A|1416
6GZ3|1|A2|G|1417
*
6GZ3|1|A2|C|1432
6GZ3|1|A2|C|1433
6GZ3|1|A2|G|1434
6GZ3|1|A2|A|1435
6GZ3|1|A2|G|1436

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AQ

ribosomal protein eL18