IL_6GZ3_062

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ3_062 not in the Motif Atlas

Geometric match to IL_7RQB_017

Geometric discrepancy: 0.2059

The information below is about IL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

6GZ3|1|A2|C|1502
6GZ3|1|A2|C|1503
6GZ3|1|A2|G|1504
*
6GZ3|1|A2|C|1637
6GZ3|1|A2|U|1638
6GZ3|1|A2|G|1639

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

ribosomal protein uL4

Chain Aa

ribosomal protein uL15