IL_6GZ3_073
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGGUAA*UAAAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ3_073 not in the Motif Atlas
- Geometric match to IL_7A0S_027
- Geometric discrepancy: 0.1663
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6GZ3|1|A2|C|1714
6GZ3|1|A2|G|1715
6GZ3|1|A2|G|1716
6GZ3|1|A2|U|1717
6GZ3|1|A2|A|1718
6GZ3|1|A2|A|1719
*
6GZ3|1|A2|U|1774
6GZ3|1|A2|A|1775
6GZ3|1|A2|A|1776
6GZ3|1|A2|A|1777
6GZ3|1|A2|U|1778
6GZ3|1|A2|G|1779
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A4
- 5S ribosomal RNA; 5S rRNA
- Chain AD
- ribosomal protein uL18
- Chain AF
- ribosomal protein uL30
- Chain AI
- Ribosomal protein L10 (Predicted)
- Chain AT
- ribosomal protein eL21
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