IL_6GZ3_116

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ3_116 not in the Motif Atlas

Homologous match to IL_5TBW_079

Geometric discrepancy: 0.1367

The information below is about IL_5TBW_079

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6GZ3|1|A2|G|2868
6GZ3|1|A2|C|2869
6GZ3|1|A2|U|2870
*
6GZ3|1|A2|A|3581
6GZ3|1|A2|A|3582
6GZ3|1|A2|C|3583

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AR

ribosomal protein eL19

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain BI

ribosomal protein eS8