IL_6GZ3_124

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ3_124 not in the Motif Atlas

Geometric match to IL_6FZ0_001

Geometric discrepancy: 0.3046

The information below is about IL_6FZ0_001

Detailed Annotation

Single stack bend with SAM intercalation

Broad Annotation

Single stack bend with SAM intercalation

Motif group

IL_75501.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6GZ3|1|A2|G|3725
6GZ3|1|A2|G|3726
*
6GZ3|1|A2|C|3740
6GZ3|1|A2|U|3741
6GZ3|1|A2|C|3742

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain Bv

Transfer RNA; tRNA