IL_6GZ3_145

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCU*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ3_145 not in the Motif Atlas

Geometric match to IL_5J7L_259

Geometric discrepancy: 0.1766

The information below is about IL_5J7L_259

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6GZ3|1|A2|G|4363
6GZ3|1|A2|C|4364
6GZ3|1|A2|U|4365
*
6GZ3|1|A2|G|4402
6GZ3|1|A2|A|4403
6GZ3|1|A2|U|4404

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AI

Ribosomal protein L10 (Predicted)

Chain Ab

ribosomal protein eL29