IL_6GZ3_209

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6GZ3|1|B1|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ3_209 not in the Motif Atlas

Geometric match to IL_7RQB_080

Geometric discrepancy: 0.1786

The information below is about IL_7RQB_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

6GZ3|1|B1|G|606
6GZ3|1|B1|U|607
6GZ3|1|B1|C|608
*
6GZ3|1|B1|G|635
6GZ3|1|B1|C|636

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BD

ribosomal protein uS3

Chain Be

ribosomal protein eS30