IL_6GZ3_245
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUGG*CGAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ3_245 not in the Motif Atlas
- Geometric match to IL_361D_001
- Geometric discrepancy: 0.3123
- The information below is about IL_361D_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_30621.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 66
Unit IDs
6GZ3|1|B1|U|1346
6GZ3|1|B1|U|1347
6GZ3|1|B1|G|1348
6GZ3|1|B1|G|1349
*
6GZ3|1|B1|C|1380
6GZ3|1|B1|G|1381
6GZ3|1|B1|A|1382
6GZ3|1|B1|A|1383
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BA
- ribosomal protein uS2
- Chain BC
- ribosomal protein uS5
- Chain BD
- ribosomal protein uS3
- Chain BR
- ribosomal protein eS17
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