IL_6GZ3_273

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AC*GGU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ3_273 not in the Motif Atlas

Geometric match to IL_7MLX_001

Geometric discrepancy: 0.1302

The information below is about IL_7MLX_001

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6GZ3|1|A2|A|1078
6GZ3|1|A2|C|1079
*
6GZ3|1|A2|G|1182
6GZ3|1|A2|G|1183
6GZ3|1|A2|U|1184

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AS

ribosomal protein eL20

Chain AT

ribosomal protein eL21