IL_6GZ5_007

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAUCC*GACAUGUGG

Length

16 nucleotides

Bulged bases

6GZ5|1|A2|G|119, 6GZ5|1|A2|G|148

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ5|1|A2|C|118
6GZ5|1|A2|G|119
6GZ5|1|A2|A|120
6GZ5|1|A2|A|121
6GZ5|1|A2|U|122
6GZ5|1|A2|C|123
6GZ5|1|A2|C|124
*
6GZ5|1|A2|G|143
6GZ5|1|A2|A|144
6GZ5|1|A2|C|145
6GZ5|1|A2|A|146
6GZ5|1|A2|U|147
6GZ5|1|A2|G|148
6GZ5|1|A2|U|149
6GZ5|1|A2|G|150
6GZ5|1|A2|G|151

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain AG

ribosomal protein eL8

Chain AN

ribosomal protein eL15

Chain Ah

ribosomal protein uL29