IL_6GZ5_015
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUCGUG*CCGG
- Length
- 10 nucleotides
- Bulged bases
- 6GZ5|1|A2|U|184
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ5_015 not in the Motif Atlas
- Geometric match to IL_4V87_185
- Geometric discrepancy: 0.3352
- The information below is about IL_4V87_185
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09990.3
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
6GZ5|1|A2|C|180
6GZ5|1|A2|U|181
6GZ5|1|A2|C|182
6GZ5|1|A2|G|183
6GZ5|1|A2|U|184
6GZ5|1|A2|G|185
*
6GZ5|1|A2|C|248
6GZ5|1|A2|C|249
6GZ5|1|A2|G|250
6GZ5|1|A2|G|251
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AL
- ribosomal protein eL13
- Chain AY
- ribosomal protein uL24
- Chain Ah
- ribosomal protein uL29
- Chain Aj
- ribosomal protein eL37
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