IL_6GZ5_021
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ5_021 not in the Motif Atlas
- Homologous match to IL_8C3A_016
- Geometric discrepancy: 0.2415
- The information below is about IL_8C3A_016
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6GZ5|1|A2|G|409
6GZ5|1|A2|U|410
6GZ5|1|A2|G|411
6GZ5|1|A2|A|412
6GZ5|1|A2|A|413
6GZ5|1|A2|A|414
6GZ5|1|A2|C|415
*
6GZ5|1|A3|G|13
6GZ5|1|A3|U|14
6GZ5|1|A3|G|15
6GZ5|1|A3|G|16
6GZ5|1|A3|A|17
6GZ5|1|A3|U|18
6GZ5|1|A3|C|19
Current chains
- Chain A2
- 28S ribosomal RNA
- Chain A3
- 5.8S ribosomal RNA
Nearby chains
- Chain AC
- ribosomal protein uL4
- Chain AP
- ribosomal protein uL22
- Chain Ae
- ribosomal protein eL32
Coloring options: