IL_6GZ5_023

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_023 not in the Motif Atlas

Geometric match to IL_5TBW_027

Geometric discrepancy: 0.1998

The information below is about IL_5TBW_027

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6GZ5|1|A2|C|454
6GZ5|1|A2|G|455
6GZ5|1|A2|G|456
*
6GZ5|1|A2|C|686
6GZ5|1|A2|A|687
6GZ5|1|A2|G|688

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AE

ribosomal protein eL6

Chain At

ribosomal protein eL28