IL_6GZ5_035

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGCCCG*CC

Length

8 nucleotides

Bulged bases

6GZ5|1|A2|C|497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_035 not in the Motif Atlas

Geometric match to IL_4WF9_089

Geometric discrepancy: 0.2724

The information below is about IL_4WF9_089

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6GZ5|1|A2|G|493
6GZ5|1|A2|G|494
6GZ5|1|A2|C|495
6GZ5|1|A2|C|496
6GZ5|1|A2|C|497
6GZ5|1|A2|G|498
*
6GZ5|1|A2|C|648
6GZ5|1|A2|C|649

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

ribosomal protein uL4