IL_6GZ5_041

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCUGGGAAGG*CAGCAGCACUCGC

Length

23 nucleotides

Bulged bases

6GZ5|1|A2|U|719, 6GZ5|1|A2|G|720, 6GZ5|1|A2|A|922

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ5|1|A2|G|717
6GZ5|1|A2|C|718
6GZ5|1|A2|U|719
6GZ5|1|A2|G|720
6GZ5|1|A2|G|721
6GZ5|1|A2|G|722
6GZ5|1|A2|A|723
6GZ5|1|A2|A|724
6GZ5|1|A2|G|725
6GZ5|1|A2|G|726
*
6GZ5|1|A2|C|915
6GZ5|1|A2|A|916
6GZ5|1|A2|G|917
6GZ5|1|A2|C|918
6GZ5|1|A2|A|919
6GZ5|1|A2|G|920
6GZ5|1|A2|C|921
6GZ5|1|A2|A|922
6GZ5|1|A2|C|923
6GZ5|1|A2|U|924
6GZ5|1|A2|C|925
6GZ5|1|A2|G|926
6GZ5|1|A2|C|927

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

ribosomal protein uL4

Chain AF

ribosomal protein uL30

Chain AM

ribosomal protein eL14

Chain AS

ribosomal protein eL20