IL_6GZ5_053

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

6GZ5|1|A2|C|1361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ5_053 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.2564

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

6GZ5|1|A2|G|1343
6GZ5|1|A2|G|1344
*
6GZ5|1|A2|C|1359
6GZ5|1|A2|G|1360
6GZ5|1|A2|C|1361
6GZ5|1|A2|C|1362

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

ribosomal protein uL4

Chain AL

ribosomal protein eL13

Chain AN

ribosomal protein eL15